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Although it has not been confirmed, it is commonly thought that Rousseau was NOT infected. It was the rest of her team who were infected as seen in season 5. She killed them as they turned on her.

It is assumed that her "craziness" is a result of being alone for 16 years on the island (although how she could have missed the Dharma stations/barracks, Jacob's various temples, lighthouses, stone foot statues, cabins...not to mention the Others, the remaining Dharama initiative, etc is probably the most unbelievable thing on LOST).

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